Reference point computation for advice rules

Documentation for package ‘FLRef’ version 1.0.6

computeFbrp	computeFbrp() Computes biological reference points corresponding to the proxy Fbrp
computeFbrps	computeFbrps() Computes biological reference points corresponding to the proxy Fbrp
Fbrp	Fbrp() Extract Fbrp based reference points from output of computeFbrp
Fmmy	Fmmy() Uses opt.bisect to derive the F at Maximum Median Yield from stochastic simulations
Fp05	Calculates the Fbar value giving a maximum probability of ssb being below Blim of 5 percent
Fsim	Fsim() Simulates stochastic stock dynamics under under constant Fbrp
getF	getF()
huecol	huecol
opt.bisect	Bisection approach to optimise x for maximising y
plotAdvice	plotAdvice Plots stochastic stock dynamics against refpts for constant Fsim()
plotAR	plotAR Plots the new proposed ICES advice rule
plotbioage	plotbioage() Plots stock N_a, W_a, M_a and Mat_a by year
plotbioyr	plotbioyr() Plots stock N_a, W_a, M_a and Mat_a across years
plotdyn	plotdyn() Plots stock trajectories at age
ploteq	ploteq() Modification of method plot('FLBRP') to plot equilibrium output of computeFbrp()
plotFsim	plotFsim Plots stochastic stock dynamics against refpts for constant Fsim()
plotMajuro	plotMAjuro Plots the new proposed ICES advice rule
plotspr	plotspr() Plots current vs unfished spawning biomass per recruit at age
plotWKREF	plotWKREF Plots the new proposed ICES advice rule
rc4	r4sscol
rGclass	Function to characterize Productivity and refpts based on r and Generation
ss3col	ss3col